Yi Pan, Jianxin Wang, Min Li

Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics

Herausgeber: Pan, Yi; Zomaya, Albert Y; Wang, Jianxin; Li, Min

• Gebundenes Buch

Produktbeschreibung

An in-depth look at the latest research, methods, and applications in the field of protein bioinformatics

This book presents the latest developments in protein bioinformatics, introducing for the first time cutting-edge research results alongside novel algorithmic and AI methods for the analysis of protein data. In one complete, self-contained volume, Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics addresses key challenges facing both computer scientists and biologists, arming readers with tools and techniques for analyzing and interpreting protein data and solving a variety of biological problems.

Featuring a collection of authoritative articles by leaders in the field, this work focuses on the analysis of protein sequences, structures, and interaction networks using both traditional algorithms and AI methods. It also examines, in great detail, data preparation, simulation, experiments, evaluation methods, and applications. Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics:
Highlights protein analysis applications such as protein-related drug activity comparison
Incorporates salient case studies illustrating how to apply the methods outlined in the book
Tackles the complex relationship between proteins from a systems biology point of view
Relates the topic to other emerging technologies such as data mining and visualization
Includes many tables and illustrations demonstrating concepts and performance figures

Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics is an essential reference for bioinformatics specialists in research and industry, and for anyone wishing to better understand the rich field of protein bioinformatics.

Produktdetails

• Wiley Series in Bioinformatics .
• Verlag: Wiley & Sons
• 1. Auflage
• Seitenzahl: 536
• Erscheinungstermin: 12. November 2013
• Englisch
• Abmessung: 240mm x 161mm x 33mm
• Gewicht: 962g
• ISBN-13: 9781118345788
• ISBN-10: 1118345789
• Artikelnr.: 36391163

Autorenporträt

YI PAN, PHD, is the Chair and Full Professor in the Department of Computer Science at Georgia State University, and a Visiting Chair Professor in the School of Information Science and Engineering at Central South University in Changsha, China. MIN LI, PHD, is Associate Professor in the School of Information Science and Engineering and a postdoctoral associate in the State Key Laboratory of Medical Genetics at Central South University in Changsha, China. JIANXIN WANG, PHD, is Associate Dean and Full Professor in the School of Information Science and Engineering at Central South University in Changsha, China.

Inhaltsangabe

PREFACE ix CONTRIBUTORS xv I FROM PROTEIN SEQUENCE TO STRUCTURE 1
EMPHASIZING THE ROLE OF PROTEINS IN CONSTRUCTION OF THE DEVELOPMENTAL
GENETIC TOOLKIT IN PLANTS 3 Anamika Basu and Anasua Sarkar 2 PROTEIN
SEQUENCE MOTIF INFORMATION DISCOVERY 41 Bernard Chen 3 IDENTIFYING CALCIUM
BINDING SITES IN PROTEINS 57 Hui Liu and Hai Deng 4 REVIEW OF IMBALANCED
DATA LEARNING FOR PROTEIN METHYLATION PREDICTION 71 Zejin Ding and Yan-Qing
Zhang 5 ANALYSIS AND PREDICTION OF PROTEIN POSTTRANSLATIONAL MODIFICATION
SITES 91 Jianjiong Gao, Qiuming Yao, Curtis Harrison Bollinger, and Dong Xu
II PROTEIN ANALYSIS AND PREDICTION 6 PROTEIN LOCAL STRUCTURE PREDICTION 109
Wei Zhong, Jieyue He, Robert W. Harrison, Phang C. Tai, and Yi Pan 7
PROTEIN STRUCTURAL BOUNDARY PREDICTION 125 Gulsah Altun 8 PREDICTION OF RNA
BINDING SITES IN PROTEINS 153 Zhi-Ping Liu and Luonan Chen 9 ALGORITHMIC
FRAMEWORKS FOR PROTEIN DISULFIDE CONNECTIVITY DETERMINATION 171 Rahul
Singh, William Murad, and Timothy Lee 10 PROTEIN CONTACT ORDER PREDICTION:
UPDATE 205 Yi Shi, Jianjun Zhou, David S. Wishart, and Guohui Lin 11
PROGRESS IN PREDICTION OF OXIDATION STATES OF CYSTEINES VIA COMPUTATIONAL
APPROACHES 217 Aiguo Du, Hui Liu, Hai Deng, and Yi Pan 12 COMPUTATIONAL
METHODS IN CRYOELECTRON MICROSCOPY 3D STRUCTURE RECONSTRUCTION 231 Fa
Zhang, Xiaohua Wan, and Zhiyong Liu III PROTEIN STRUCTURE ALIGNMENT AND
ASSESSMENT 13 FUNDAMENTALS OF PROTEIN STRUCTURE ALIGNMENT 255 Mark Brandt,
Allen Holder, and Yosi Shibberu 14 DISCOVERING 3D PROTEIN STRUCTURES FOR
OPTIMAL STRUCTURE ALIGNMENT 281 Tomás Novosád, Václav Snásel, Ajith
Abraham, and Jack Y. Yang 15 ALGORITHMIC METHODOLOGIES FOR DISCOVERY OF
NONSEQUENTIAL PROTEIN STRUCTURE SIMILARITIES 299 Bhaskar DasGupta, Joseph
Dundas, and Jie Liang 16 FRACTAL RELATED METHODS FOR PREDICTING PROTEIN
STRUCTURE CLASSES AND FUNCTIONS 317 Zu-Guo Yu, Vo Anh, Jian-Yi Yang, and
Shao-Ming Zhu 17 PROTEIN TERTIARY MODEL ASSESSMENT 339 Anjum Chida, Robert
W. Harrison, and Yan-Qing Zhang IV PROTEIN-PROTEIN ANALYSIS OF BIOLOGICAL
NETWORKS 18 NETWORK ALGORITHMS FOR PROTEIN INTERACTIONS 357 Suely Oliveira
19 IDENTIFYING PROTEIN COMPLEXES FROM PROTEIN-PROTEIN INTERACTION NETWORKS
377 Jianxin Wang, Min Li, and Xiaoqing Peng 20 PROTEIN FUNCTIONAL MODULE
ANALYSIS WITH PROTEIN-PROTEIN INTERACTION (PPI) NETWORKS 393 Lei Shi,
Xiujuan Lei, and Aidong Zhang 21 EFFICIENT ALIGNMENTS OF METABOLIC NETWORKS
WITH BOUNDED TREEWIDTH 413 Qiong Cheng, Piotr Berman, Robert W. Harrison,
and Alexander Zelikovsky 22 PROTEIN-PROTEIN INTERACTION NETWORK ALIGNMENT:
ALGORITHMS AND TOOLS 431 Valeria Fionda V APPLICATION OF PROTEIN
BIOINFORMATICS 23 PROTEIN-RELATED DRUG ACTIVITY COMPARISON USING SUPPORT
VECTOR MACHINES 451 Wei Zhong and Jieyue He 24 FINDING REPETITIONS IN
BIOLOGICAL NETWORKS: CHALLENGES, TRENDS, AND APPLICATIONS 461 Simona E.
Rombo 25 MeTaDoR: ONLINE RESOURCE AND PREDICTION SERVER FOR MEMBRANE
TARGETING PERIPHERAL PROTEINS 481 Nitin Bhardwaj, Morten Källberg, Wonhwa
Cho, and Hui Lu 26 BIOLOGICAL NETWORKS-BASED ANALYSIS OF GENE EXPRESSION
SIGNATURES 495 Gang Chen and Jianxin Wang INDEX 507