Bacteriophages

Methods and Protocols, Volume 3
Herausgegeben:Clokie, Martha R.J.; Kropinski, Andrew M.; Lavigne, Rob

• Broschiertes Buch

Produktbeschreibung

This book expands on the previous volumes with new chapters exploring emerging themes and methodologies in bacterial virus research. The chapters in this book are divided into 4 parts and cover topics such as: iron chloride flocculation of bacteriophages from seawater; encapsulation of Listeria phage A511 by alginate; examining genome termini of bacteriophage through high-throughput sequencing; genome sequencing of dsDNA-containing bacteriophages directly from a single plaque; characterizing bacteriophages by biology, taxonomy, and genome analysis; phage genome annotation using the RAST pipeline; and the use of RP4::mini-Mu for gene transfer. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Cutting edge and authoritative, Bacteriophages: Methods and Protocols, Volume III is a valuable resource for both established and novice phage scientists.

Produktdetails

• Methods in Molecular Biology 1681
• Verlag: Humana / Springer New York / Springer, Berlin
• Artikelnr. des Verlages: 978-1-4939-8458-9
• Softcover reprint of the original 1st ed. 2018
• Seitenzahl: 332
• Erscheinungstermin: 23. August 2018
• Englisch
• Abmessung: 254mm x 177mm x 19mm
• Gewicht: 633g
• ISBN-13: 9781493984589
• ISBN-10: 1493984586
• Artikelnr.: 55723821

Inhaltsangabe

Basic Phage Mathematics.- Analysis of Host-Takeover during SPOi Infection of Bacillus subtilis.- Practical Advice on the One-Step Growth Curve.- Iron Chloride Flocculation of Bacteriophages from Seawater.- Purification of Bacteriophages using Anion-Exchange Chromatography.- Encapsulation Strategies of Bacteriophages (Felix O1) for Oral Therapeutic Application.- Encapsulation of Listeria Phage A511 by Alginate to Improve its Thermal Stability.- Application of a Virucidal Agent to Avoid Over-Estimation of Phage Kill during Phage Decontamination Assays on Ready-to-Eat Meats.- Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes.- Identification of DNA Base Modifications by Means of Pacific Biosciences RS Sequencing Technology.- Analyzing Genome Termini of Bacteriophage Through High-Throughput Sequencing.- Amplification for Whole Genome Sequencing of Bacteriophages from Single Isolated Plaques using SISPA.- Genome Sequencing of dsDNA-Containing Bacteriophages Directly from a Single Plaque.- Preparing cDNA Libraries from Lytic Phage Infected Cells for Whole Transcriptome Analysis by RNA-Seq.- Essential Steps in Characterizing Bacteriophages: Biology, Taxonomy, and Genome Analysis.- Annotation of Bacteriophage Genome Sequences using DNA Master: An Overview.- Phage Genome Annotation using the RAST Pipeline.- Visualization of Phage Genomic Data: Comparative Genomics and Publication-Quality Diagrams.- Transposable Bacteriophages as Genetic Tools.- Applications of the Bacteriophage Mu In Vitro Transposition Reaction and Genome Manipulation via Electroporation of DNA Transposition Complexes.- Use of RP4::mini-Mu for Gene Transfer.- Muprints and Whole Genome Insertion Scans: Methods for Investigating Chromosome Accessibility and DNA Dynamics using Bacteriophage Mu.