Integer linear programming is a versatile modeling and optimization technique with potential to transform biological computation. This hands-on text, designed for students, researchers, and professionals in both biology and computational fields, demonstrates applications in genomics, RNA and protein folding, DNA sequencing, phylogenetics, and more.
Integer linear programming is a versatile modeling and optimization technique with potential to transform biological computation. This hands-on text, designed for students, researchers, and professionals in both biology and computational fields, demonstrates applications in genomics, RNA and protein folding, DNA sequencing, phylogenetics, and more.Hinweis: Dieser Artikel kann nur an eine deutsche Lieferadresse ausgeliefert werden.
Dan Gusfield is Distinguished Professor of Computer Science at the University of California, Davis, and a Fellow of the IEEE, the ACM, and the International Society of Computational Biology (ISCB). His previous books include The Stable Marriage Problem (1989, with Robert W. Irving), Algorithms on Strings, Trees and Sequences (Cambridge, 1997) and ReCombinatorics (2014). He has served as chair of the computer science department at UCD (2000-04), and was the founding Editor-in-Chief of the IEEE/ACM Transactions of Computational Biology and Bioinformatics until January 2009. He has been instrumental in the definition and development of the intersection between computer science and computational biology.
Inhaltsangabe
Preface Part I: 1. A fly-over introduction 2. Biological networks and graphs 3. Character compatibility 4. Near-cliques 5. Parsimony in phylogenetics 6. RNA folding 7. Protein problems 8. Tanglegrams 9. TSP in genomics 10. Molecular sequence analysis 11. Metabolic networks and engineering 12. ILP idioms Part II: 13. Communities and cuts 14. Corrupted data and extensions in phylogenetics 15. More tanglegrams and trees 16. Return to Steiner-trees 17. Exploiting protein networks 18. More strings and sequences 19. Max-likelihood pedigrees 20. Haplotyping 21. Extended exercises 22. What's next? Epilogue: opinionated comments.
Preface Part I: 1. A fly-over introduction 2. Biological networks and graphs 3. Character compatibility 4. Near-cliques 5. Parsimony in phylogenetics 6. RNA folding 7. Protein problems 8. Tanglegrams 9. TSP in genomics 10. Molecular sequence analysis 11. Metabolic networks and engineering 12. ILP idioms Part II: 13. Communities and cuts 14. Corrupted data and extensions in phylogenetics 15. More tanglegrams and trees 16. Return to Steiner-trees 17. Exploiting protein networks 18. More strings and sequences 19. Max-likelihood pedigrees 20. Haplotyping 21. Extended exercises 22. What's next? Epilogue: opinionated comments.
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