This book of contributed chapters is authored by renowned scientists and covers recent results in the highly topical area of mathematics in evolution and phylogeny. Each chapter is a detailed overview of a specific topic, from the underlying concepts to the latest results.
This book of contributed chapters is authored by renowned scientists and covers recent results in the highly topical area of mathematics in evolution and phylogeny. Each chapter is a detailed overview of a specific topic, from the underlying concepts to the latest results.
Olivier Gascuel leads a research group at LIRMM-CNRS, Montpellier. He is an associate editor of Systematic Biology and belongs to the editorial board of BMC-Bioinformatics, BMC-Evolutionary Biology, and BMC-Algorithms for Molecular Biology. He has published 110 papers and book chapters, and authored several widely used programs in phylogenetics and bioinformatics.
Inhaltsangabe
* Introduction * 1: Richard Desper and Olivier Gascuel: The minimum evolution distance-based approach of phylogenetic inference * 2: David Bryant, Nicolas Galtier, and Marie-Anne Poursat: Likelihood calculation in molecular phylogenetics * 3: Ziheng Yang: Bayesian inference in molecular phylogenetics * 4: Susan Holmes: Statistical approaches to test involving phylogenetics * 5: Mark Pagel and Andrew Meade: Mixture models in phylogenetic inference * 6: Michael D. Hendy: Hadamard conjugation: an analytic tool for phylogenetics * 7: Vincent Moulton and Katharina Huber: Phylogenetic networks * 8: Olivier Gascuel, Denis Bertrand, and Olivier Elemento: Recontructing the duplication history of tandemly repeated sequences * 9: David Sankoff: Conserved segment statistics and rearrangement inferences in comparative genomics * 10: Anne Bergeron, Julia Mixtacki, and Jens Stoye: The inversion distance problem * 11: Nadia El-Mabrouk: Genome rearrangement with gene families * 12: Bernard M.E. Moret, Jijun Tang, and Tandy Warnow: Reconstructing phylogenies from gene-content and gene-order data * 13: Li-San Wang and Tandy Warnow: Distance-based genome rearrangement phylogeny * 14: Elchanan Mossel and Mike Steel: How much can evolved characters tell us about the tree that generated them?
* Introduction * 1: Richard Desper and Olivier Gascuel: The minimum evolution distance-based approach of phylogenetic inference * 2: David Bryant, Nicolas Galtier, and Marie-Anne Poursat: Likelihood calculation in molecular phylogenetics * 3: Ziheng Yang: Bayesian inference in molecular phylogenetics * 4: Susan Holmes: Statistical approaches to test involving phylogenetics * 5: Mark Pagel and Andrew Meade: Mixture models in phylogenetic inference * 6: Michael D. Hendy: Hadamard conjugation: an analytic tool for phylogenetics * 7: Vincent Moulton and Katharina Huber: Phylogenetic networks * 8: Olivier Gascuel, Denis Bertrand, and Olivier Elemento: Recontructing the duplication history of tandemly repeated sequences * 9: David Sankoff: Conserved segment statistics and rearrangement inferences in comparative genomics * 10: Anne Bergeron, Julia Mixtacki, and Jens Stoye: The inversion distance problem * 11: Nadia El-Mabrouk: Genome rearrangement with gene families * 12: Bernard M.E. Moret, Jijun Tang, and Tandy Warnow: Reconstructing phylogenies from gene-content and gene-order data * 13: Li-San Wang and Tandy Warnow: Distance-based genome rearrangement phylogeny * 14: Elchanan Mossel and Mike Steel: How much can evolved characters tell us about the tree that generated them?
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