Metagenomics: Perspectives, Methods, and Applications provides thorough coverage of the rapidly growing field of metagenomics. A diverse range of chapters from international experts offers an introduction to the field and examines methods for metagenomic analysis of microbiota, metagenomic computational tools and pipelines, and recent metagenomic studies in various environments. The emphasis on application makes this text particularly useful for translational researchers, clinicians, and students seeking to employ metagenomic approaches to advance knowledge in the biomedical and life sciences.…mehr
Metagenomics: Perspectives, Methods, and Applications provides thorough coverage of the rapidly growing field of metagenomics. A diverse range of chapters from international experts offers an introduction to the field and examines methods for metagenomic analysis of microbiota, metagenomic computational tools and pipelines, and recent metagenomic studies in various environments. The emphasis on application makes this text particularly useful for translational researchers, clinicians, and students seeking to employ metagenomic approaches to advance knowledge in the biomedical and life sciences. Case study-based chapters explore topics ranging from viral metagenome profiling to metagenomic insights into the human oral and gut microbiome and metabolic syndromes, functional annotation of metagenomes, and metagenomic analysis of extreme environments. Additionally, perspectives on future potential instill motivation for continued study in this exciting and fruitful research area.--
1. Metagenomics: A Paradigm Shift in Microbiology Andrey V. Mardanov Vitaly V. Kadnikov Nikolai V. Ravin 2. Metagenomic Protocols and Strategies Celia Méndez-García Rafael Bargiela Mónica Martínez-Martínez Manuel Ferrer 3. Strategies for Taxonomic and Functional Annotation of Metagenomes Johan Bengtsson-Palme 4. Computational and Statistical Considerations in the Analysis of Metagenomic Data Fredrik Boulund Mariana Buongermino Pereira Viktor Jonsson Erik Kristiansson 5. 16S rRNA-Based Taxonomy Profiling in the Metagenomics Era Matteo Ramazzotti Giovanni Bacci 6. Analyzing High-Throughput Microbial Amplicon Sequence Data Using Multiple Markers Ilya Y. Zhbannikov James A. Foster 7. Human Body to Water Reservoirs: Estimating Viral Population Characteristics Using High-Throughput Sequencing Duleepa Jayasundara Sen-Lin Tang SamanK. Halgamuge 8. Measuring Microbiome Diversity With Hill Numbers Zhanshan (Sam) Ma 9. Metagenomics: Implications in Oral Health and Disease Muniyandi Nagarajan Vandana R. Prabhu Ranganathan Kamalakkannan 10. The Human Gut Microbiome in Health and Disease Juan Jovel Levinus A. Dieleman Dina Kao Andrew L. Mason Eytan Wine 11. Comprehensive Exploration of the Rumen Microbial Ecosystem With Advancements in Metagenomics Ramesh K. Kothari Neelam M. Nathani Chandrashekar Mootapally Jalpa K. Rank Haren B. Gosai Bharti P. Dave Chaitanya G. Joshi 12. The Microbiome of Desert CAM Plants: Lessons From Amplicon Sequencing and Metagenomics Citlali Fonseca-García Damaris Desgarennes Víctor M. Flores-Núñez Laila P. Partida-Martínez 13. Metagenomics of Marine Invertebrate-Microbial Consortium. Muthan Krishnaveni Santhi Asha Stephen Sharmin Vini Stanislaus Mary Josephine Punitha 14. Novel Biological Resources Screened From Uncultured Bacteria by a Metagenomic Method Nobutada Kimura 15. Advances of Functional Metagenomics in Harnessing Thermozymes Juan-José Escuder-Rodríguez María-Eugenia DeCastro Manuel Becerra Esther Rodríguez-Belmonte María-Isabel González-Siso 16. Direct Cellulase Gene Amplification From Hot Spring Using the Guidance of 16S rRNA Amplicon Metagenomics Kok Jun Liew Chia Chiu Lim Chia Sing Chan Kwek Yan Wei Madihah Md Salleh Rajesh Kumar Sani Kok-Gan Chan Kian Mau Goh 17. Comparative Metaproteomics to Study Environmental Changes Sabine Matallana-Surget Pratik D. Jagtap Timothy J. Griffin Mélanie Beraud Ruddy Wattiez
1. Metagenomics: A Paradigm Shift in Microbiology Andrey V. Mardanov Vitaly V. Kadnikov Nikolai V. Ravin 2. Metagenomic Protocols and Strategies Celia Méndez-García Rafael Bargiela Mónica Martínez-Martínez Manuel Ferrer 3. Strategies for Taxonomic and Functional Annotation of Metagenomes Johan Bengtsson-Palme 4. Computational and Statistical Considerations in the Analysis of Metagenomic Data Fredrik Boulund Mariana Buongermino Pereira Viktor Jonsson Erik Kristiansson 5. 16S rRNA-Based Taxonomy Profiling in the Metagenomics Era Matteo Ramazzotti Giovanni Bacci 6. Analyzing High-Throughput Microbial Amplicon Sequence Data Using Multiple Markers Ilya Y. Zhbannikov James A. Foster 7. Human Body to Water Reservoirs: Estimating Viral Population Characteristics Using High-Throughput Sequencing Duleepa Jayasundara Sen-Lin Tang SamanK. Halgamuge 8. Measuring Microbiome Diversity With Hill Numbers Zhanshan (Sam) Ma 9. Metagenomics: Implications in Oral Health and Disease Muniyandi Nagarajan Vandana R. Prabhu Ranganathan Kamalakkannan 10. The Human Gut Microbiome in Health and Disease Juan Jovel Levinus A. Dieleman Dina Kao Andrew L. Mason Eytan Wine 11. Comprehensive Exploration of the Rumen Microbial Ecosystem With Advancements in Metagenomics Ramesh K. Kothari Neelam M. Nathani Chandrashekar Mootapally Jalpa K. Rank Haren B. Gosai Bharti P. Dave Chaitanya G. Joshi 12. The Microbiome of Desert CAM Plants: Lessons From Amplicon Sequencing and Metagenomics Citlali Fonseca-García Damaris Desgarennes Víctor M. Flores-Núñez Laila P. Partida-Martínez 13. Metagenomics of Marine Invertebrate-Microbial Consortium. Muthan Krishnaveni Santhi Asha Stephen Sharmin Vini Stanislaus Mary Josephine Punitha 14. Novel Biological Resources Screened From Uncultured Bacteria by a Metagenomic Method Nobutada Kimura 15. Advances of Functional Metagenomics in Harnessing Thermozymes Juan-José Escuder-Rodríguez María-Eugenia DeCastro Manuel Becerra Esther Rodríguez-Belmonte María-Isabel González-Siso 16. Direct Cellulase Gene Amplification From Hot Spring Using the Guidance of 16S rRNA Amplicon Metagenomics Kok Jun Liew Chia Chiu Lim Chia Sing Chan Kwek Yan Wei Madihah Md Salleh Rajesh Kumar Sani Kok-Gan Chan Kian Mau Goh 17. Comparative Metaproteomics to Study Environmental Changes Sabine Matallana-Surget Pratik D. Jagtap Timothy J. Griffin Mélanie Beraud Ruddy Wattiez
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