This book provides a friendly introduction to Perl that emphasizes good programming practices with repeated exposure to pattern matching as applied to biological sequence analysis (DNA analysis, Protein analysis). The book is appropriate for postgraduates in computer science or biology and in particular to new interdisciplinary courses.
This book provides a friendly introduction to Perl that emphasizes good programming practices with repeated exposure to pattern matching as applied to biological sequence analysis (DNA analysis, Protein analysis). The book is appropriate for postgraduates in computer science or biology and in particular to new interdisciplinary courses.
1: Introduction: Explorations and Indexes 2: Essential First Steps 3: Playing with DNA Sequences (and words) Using Regular Expressions 4: Your First Perl Programs with a Focus on String Analysis 5: Using Perl to Do Calculations 6: Making Decisions Over and Over Again with Perl's "if" and "while" 7: Subroutines 8: Accessing Files of Sequences from Databases 9: Arrays 10: Hash Tables 11: Phrasing Questions by Writing Algorithms 12: Regular Expressions Revisited 13: Understanding Randomness 14: Modules 15: Conclusions Appendix I Appendix II Bibliography
1: Introduction: Explorations and Indexes 2: Essential First Steps 3: Playing with DNA Sequences (and words) Using Regular Expressions 4: Your First Perl Programs with a Focus on String Analysis 5: Using Perl to Do Calculations 6: Making Decisions Over and Over Again with Perl's "if" and "while" 7: Subroutines 8: Accessing Files of Sequences from Databases 9: Arrays 10: Hash Tables 11: Phrasing Questions by Writing Algorithms 12: Regular Expressions Revisited 13: Understanding Randomness 14: Modules 15: Conclusions Appendix I Appendix II Bibliography
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