The study examined the effect of results orientated based monitoring and evaluation of children's rights in Uganda. The study was guided by three objectives: To examine how institutional factors influence the establishment of result based monitoring and evaluation system in AVCR Uganda. Analyze the relationship between organizational resources and the establishment of result based monitoring and evaluation system in AVCR Uganda and find out how organizational capacity influence the establishment of result based monitoring and evaluation system in AVCR Uganda. The study adopted a mixed method to enable collection of both Quantitative and Qualitative data. It also adopted a cross section research design and used research paradigm approach that, enabled clear understanding of the variables under study. Data was collected using closed ended questionnaire, documentary review and validated with individual interviews. The parameters that affect the variables were extracted using exploratory factor analysis with a maximum likelihood extraction method. Data collected was entered using SPSS version 21 and analysed with Structural Equation Modelling using AMOS version 21 tested in Uganda.