The Earth is regarded as an open non-stationary dynamic physical and chemical system with one common property: the vibration of all its composition, structure and state elements. The structural-material associations synchronous for interval chaos - order from the series: atom - element - ion - molecule - mineral - rock (formational) periodic from composition Solar System in the history of Earth is formed. The variety of dissipative and fractal geological structures - structural-material complexes (SMC) originate at the microscopic level in the process of self-organization of the field of resonances and go through several stages. The formation of the Earth's lithosphere is presented as a periodic a self-similar repeated repetition of structural-material complexes (SMC) for of 4.5 billion years. Each SMC includes the synchronous igneous (ultra-basic, basic-diorite-granite part), ore, sedimentary, metamorphic, etc. geological formations and related phenomena and structures formed ata certain stage of the Earth's development. The self-organization of the Earth's Crust of the Pamirs (the west of the Himalayas Orogen) is considered.