Eugene Permyakov, Robert H. Kretsinger

Calcium Binding Proteins (eBook, PDF)

• Format: PDF

Produktbeschreibung

Calcium Binding Proteins explains the unique and highly diverse functions of calcium in biology, which are realized by calcium binding proteins. The structures and physical characteristics of these calcium binding proteins are described, as well as their functions and general patterns of their evolution. Techniques that underlie the description of proteins are discussed, including NMR, circular dichroism, optical rotatory dispersion spectroscopy, calorimetry,and crystallography. The book discusses the patterns of bochmical phenomena such as calcium homeostasis, mineralization, and cell signaling that involve specific proteins. It summarizes ongoing research and presents general hypotheses that help to focus future research, and also provides a conceptual framework and a description of the underlying techniques that permits someone entering the field to become conversant.

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Produktdetails

• Verlag: Jossey-Bass
• Seitenzahl: 592
• Erscheinungstermin: 7. Februar 2011
• Englisch
• ISBN-13: 9780470872383
• Artikelnr.: 38214286

Autorenporträt

Eugene A. Permyakov received his PhD in physics and mathematics at the Moscow Institute of Physics and Technology in 1976 and defended his Doctor of Science dissertation in biology at Moscow State University in 1989. From 1970 to 1994, he worked at the Institute of Theoretical and Experimental Bio-physics of the Russian Academy of Sciences. Since 1994 he has been the Director of the Institute for Biological Instrumentation of the Russian Academy of Sciences. He is known for his work on metal binding proteins and the intrinsic fluorescence method. His primary research focus is the study of physico-chemical and functional properties of metal binding (especially calcium-binding) proteins. Robert H. Kretsinger received his PhD in biophysics at the Massachusetts Institute of Technology under the supervision of Alex Rich in 1964. In 1967 he set up a protein crystallography lab in the Department of Biology at the University of Virginia, where he¿presently teaches, and determined the crystal structure of parvalbumin as well as describing the EF-hand domain in 1971. He has subsequently investigated the structures, functions, and evolution of various EF-hand homologs, along with other protein families. From 1978 to 1995, he directed a national facility to build multiwire area detectors for x-ray diffraction and to collect data from protein crystals.

Inhaltsangabe

Preface xi 1 Historical Perspective 1 1.1 Biomineralization 1 1.2 Coagulation 4 1.3 Secondary Messengers (Anticipated) 6 1.4 Colloids 6 1.5 Cross-Linking and Cell Surfaces 8 1.6 Secondary Messengers (Updated) 10 1.7 Pumps Channels and Ionophores 12 1.8 Calcium Binding Proteins 1 1.9 Secondary Messengers (Yet Again) 14 1.10 Mitochondria 16 1.11 Pumps Channels and Ionophores 18 1.12 Hormones 23 1.13 Measurement 26 1.14 Biomineralization: Redux 29 2 Physiological Processes Involving Calcium Binding Proteins 33 2.1 Calcium as a Secondary Messenger 34 2.2 Calcium Buffers 41 2.3 Calcium Pumps and Channels 41 2.4 Mitochondria 42 2.5 Eubacteria 43 2.6 Calcium and Extracellular Proteins 45 2.7 Biomineralization 46 2.8 Calcium and Viruses 51 3 Comparison of the Ca 2+ Ion with Other Metal Cations 55 3.1 Calcium Isotopes 55 3.2 Calcium in the Environment 55 3.3 Uses of Calcium 56 3.4 Health Effects of Calcium 57 3.5 Biologically Significant Metals in the Periodic Table 57 3.6 Hydration of Metal Ions 59 3.7 "Hard" and "Soft" Metal Ions 60 4 Complexes of Calcium and Other Cations with Compounds of Low Molecular Weight 63 4.1 Crystal Structures of Complexes of Calcium with Low Molecular Weight Compounds 63 4.2 Dissociation Constants of Calcium and Analogs with Small Compounds 66 4.3 Solubilities of Calcium and Analogs with Small Compounds 67 5 Stoichiometry Kinetics and Thermodynamics of Calcium Binding 71 5.1 Stoichiometry Affinity and Cooperativity of Binding 71 5.2 Kinetics of Binding 77 5.3 Partition of Free Energy of Binding (
G) Among Enthalpy (
H) and Entropy (
S) 78 6 Experimental Methods Used to Study Calcium Binding to Proteins 83 6.1 Radioactivity 83 6.2 Ion-Selective Electrodes 84 6.3 Calcium Buffers 85 6.4 Dialysis Equilibrium and Flow 86 6.5 Proteolysis 88 6.6 Deuterium Exchange 88 6.7 Isothermal Titration Calorimetry 89 6.8 Differential Scanning Calorimetry 91 6.9 Mass Spectroscopy 92 6.10 Calcium-Specific Dyes and Fluors 94 6.11 Atomic Flame Absorption Spectroscopy 97 6.12 Absorption Spectroscopy 99 6.13 Fluorescence Spectroscopy 102 6.14 Circular Dichroic and Optical Rotatory Dispersion Spectroscopy 105 6.15 Nuclear Magnetic Resonance 107 6.16 Electron Spin Resonance 110 6.17 Surface Plasmon Resonance 111 6.18 Extended X-ray Absorption Spectroscopy 112 6.19 Small Angle X-ray Scattering 113 6.20 Crystallography 113 7 Structure and Evolution of Proteins 117 7.1 Domain 117 7.2 Structure 119 7.3 Evolution 122 8 Protein Complexes with Metals Other than Calcium 127 8.1 Essential Hard Cations 129 8.2 Essential Metals with Several Valence States 152 8.3 Conclusions 187 9 Nonessential Metals 189 9.1 Alkali Metals (Group Ia) 189 9.2 Alkali Earth Metals (Group IIa) 193 9.3 Group IIIa 197 9.4 Group IVa 204 9.5 Group Va 206 9.6 Group VIIa 206 9.7 Group VIII 207 9.8 Group Ib 209 9.9 Mercury (Group IIb) 210 9.10 Group IIIb 211 9.11 Group IVb 215 9.12 Group Vb 217 9.13 Polonium (Group VIb) 219 9.14 Conclusions and Generalizations 219 10 Parvalbumin 221 10.1 Structure 221 10.2 Function 231 11 EF-Hand Proteins 237 11.1 CTER (Calmodulin Troponin C Essential and Regulatory Light Chain) Subfamily 237 11.2 CPR (Calcineurin B p22 Recoverin) Subfamily 266 11.3 S100 Subfamily 278 11.4 Penta-EF-Hand Subfamily 294 11.5 Proteins with Six EF-Hands 300 11.6 Proteins with Eight and 12 EF-Hands 305 11.7 Proteins with Four EF-Hands 306 11.8 Proteins with Two EF-Hands 315 11.9 EF-Hand Proteins in Bacteria and Viruses 323 12 Cytosolic Calcium Binding Proteins Lacking EF-Hands 327 12.1 Annexins 328 12.2 C2-Domain Proteins 334 12.3 Calcium ATPases 350 12.4 Calcium Binding Proteins of the Endoplasmic Reticulum 354 13 Extracellular Calcium Binding Proteins 361 13.1
-Lactalbumin 362 13.2 Cell Matrix Proteins 371 13.3 Blood-Clotting Proteins 380 13.4 Osteocalcin 383 13.5 Calcium Binding Lectins 385 13.6 Calcium Binding Hydrolytic Enzymes 389 13.7 Miscellaneous 396 14 Interactions of Calcium Binding Proteins with Other Metal Ions 399 14.1 Magnesium 399 14.2 Sodium and Potassium 402 14.3 Zinc 403 14.4 Trace Metals 406 15 Interactions of Calcium Binding Proteins with Other Proteins and with Membranes 411 15.1 Interactions with Other Proteins 411 15.2 Interactions with Membranes 428 16 Genetic Engineering of Calcium Binding Proteins 439 16.1 Problems 440 16.2 Insertion of Reporter Groups 441 16.3 Mutations in Calcium Binding Sites 442 16.4 Mutations Elsewhere Than in Calcium Binding Sites 448 16.5 Generation of Chimeric Proteins 451 16.6 Creation of Calcium Binding Sites in Proteins 453 16.7 Studies of Protein-Protein and Protein-Membrane Interactions 455 References 459 Index 567