Exploring the computational background of ontologies, this self-contained text helps readers understand ontological algorithms and their applications. It describes a host of bio-ontologies, including Gene Ontology and Human Phenotype Ontology. The authors cover graph and inference algorithms and explain how these algorithms are used in biological and biomedical applications. They also offer overviews of the R programming language and the W3C standards of XML, RDF, and OWL. Along with extensive references and many exercises, the book provides software and data on a supporting website.
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